Publication

Publications:
  1. Shima Aliebrahimi, Shideh Montasser Kouhsari, Seyed Nasser Ostad, Seyed Shahriar Arab, Leila Karami (2017) Identification of Phytochemicals Targeting c-Met Kinase Domain using Consensus Docking and Molecular Dynamics Simulation Studies. Cell Biochem Biophys.   doi:10.1007/s12013-017-0821-6

  2. Hassan Rasouli, Masomeh Mehrabi, Seyed Shahriar Arab, Reza Khodarahmi (2017) Are Pro8/Pro18 really critical for functional dynamic behavior of human endostatin N‐terminal peptide? A comparative molecular dynamics study. J IRAN CHEM SOC.   doi:10.1007/s13738-017-1140-y

  3. Ehsan Dehnavi Mehrnoosh Fathi-Roudsari Sako Mirzaie Seyed Shahriar Arab Seyed Omid Ranaei Siadat Khosro Khajeh (2016) Engineering disulfide bonds in Selenomonas ruminantium β-xylosidase by experimental and computational. International Journal of Biological Macromolecules.   doi: 10.1016/j.ijbiomac.2016.10.104

  4. Abolfazl Jangholi, Mohammad Reza Ashrafi-Kooshk, Seyed Shahriar Arab, Gholamhossein Riazi, Farzad Mokhtari, Mansour Poorebrahim, Hamid Mahdiuni, Boris I. Kurganov, Ali Akbar Moosavi-Movahedi, Reza Khodarahmi (2016) Appraisal of role of the polyanionic inducer length on amyloid formation by 412-residue 1N4R Tau protein: A comparative study. Archives of Biochemistry and Biophysics. 609, 1-19  doi: 10.1016/j.abb.2016.09.004
  5. Marziyeh Movahedi, Fatemeh Zare-Mirakabad and Seyed Shahriar Arab (2016) Evaluating the accuracy of protein design using native secondary sub-structures. BMC Bioinformatics. 17:353  doi: 10.1186/s12859-016-1199-y
  6. Azam Azimi, Seyed Mahmood Ghaffari, Gholam Hossein Riazi , Seyed Shahriar Arab, Mohammad Mehdi Tavakol, Shahriar Pooyan (2016) α-Cyperone of Cyperus rotundus is an effective candidate for reduction of inflammation by destabilization of microtubule fibers in brain. Journal of Ethnopharmacology  .   doi: 10.1016/j.jep.2016.06.058
  7. Maryam Iman, Seyede Samaneh Mostafavi, Seyed Shahriar Arab, Sadegh Azimzadeh and Mansour Poorebrahim (2016) HOXB7 and Hsa-miR-222 as the Potential Therapeutic Candidates for Metastatic Colorectal Cancer. Recent Patents on Anti-Cancer Drug Discovery  Vol. 11, Issue 4.   doi: 10.2174/1574892811999160628114857
  8. Niloofar Niknam, Hamed Khakzad, Seyed Shahriar Arab, Hossein Naderi-Manesh (2016) PDB2Graph: A Toolbox for Identifying Critical Amino Acids Map in Proteins Based on Graph Theory. Computers in Biology and Medicine  Vol. 72,  151–159.   doi: 10.1016/j.compbiomed.2016.03.012
  9. Maryam Siah, Mohammad Hosein Farzaei, Mohammad Reza Ashrafi-Kooshk, Hadi Adibi, Seyed Shahriar Arab, Mohammad Reza Rashidi, Reza Khodarahmi (2016) Inhibition of guinea pig aldehyde oxidase activity by different flavonoid compounds: An in vitro study. Bioorganic Chemistry Vol. 64 74–84  doi: 10.1016/j.bioorg.2015.12.004
  10. Mahdi Jalili, Ali Salehzadeh-Yazdi, Yazdan Asgari, Seyed Shahriar Arab, Marjan Yaghmaie, Ardeshir Ghavamzadeh, Kamran Alimoghaddam (2015) CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis. PLOS ONE 10(11):E0143111 doi: 10.1371/journal.pone.0143111
  11. Mohammad Salehi, Maryam Nikkhah, Atieh Ghasemi, Seyed Shahriar Arab (2015) Mitochondrial membrane disruption by aggregation products of ALS-causing superoxide dismutase-1 mutants. International Journal of Biological Macromolecules Vol. 75,  290–297 doi: 10.1016/j.ijbiomac.2015.01.022
  12. S. M. Najibi, M. R. Faghihi, M. Golalizadeh, S. S. Arab (2015) Bayesian Alignment of Proteins via Delaunay Tetrahedralization. Journal of Applied Statistics , Vol. 42,  Issue 5: 1064-1079 doi: 10.1080/02664763.2014.995605
  13.  Ardeshir Hesampour, Seyed Ehsan Ranaei Siadat, Mohammad Ali Malboobi, Nooshin Mohandesi, S. Shahriar Arab, Mohammad Mehdi Ghahremanpour (2014) Enhancement of Thermostability and Kinetic Efficiency of Aspergillus niger PhyA Phytase by Site-Directed Mutagenesis. Appl Biochem Biotechnol , Vol. 175,  Issue 5: 2528-2541 doi: 10.1007/s12010-014-1440-y
  14. Fahimeh Ghavamipour, S. Shirin Shahangian, Reza H. Sajedi, S. Shahriar Arab, Kamran Mansouri and Mahmoud Reza Aghamaali (2014) Development of a highly-potent anti-angiogenic VEGF8–109 heterodimer by directed blocking of its VEGFR-2 binding siteFEBS Journal , Vol. 281,  Issue 19: 4479-4494 doi: 10.1111/febs.12956
  15. Fereshteh Shamsipour, Saeeideh Hosseinzadeh, Seyed Shahriar Arab, Sedigheh Vafaei, Samira Farid, Mahmood Jeddi-Tehrani, Saeed Balalaie (2014) Synthesis and investigation of new Hesperadin analogues antitumor effects on HeLa cells. Journal of Chemical Biology, Vol. 7,  Issue 3: 85-91. doi: 10.1007/s12154-014-0111-3
  16. Mohammad Mehdi Ghahremanpour, Seyed Shahriar Arab, Saman Biook Aghazadeh, Jin Zhang and David van der Spoel (2013) MemBuilder: A Web-Based Graphical Interface to Build Heterogeneously Mixed Membrane Bilayers for the GROMACS Biomolecular Simulation Program. Bioinformatics, Vol. 30, Issue 3: 439-441  doi: 10.1093/bioinformatics/btt680
  17. Nazanin Pirooznia, Sadegh Hasannia, Seyed Shahriar Arab, Abbas Sahebghadam Lotfi and Mostafa Ghanei (2013) The design of a new truncated and engineered alpha1-antitrypsin based on theoretical studies: an antiprotease therapeutics for pulmonary diseases. Theoretical Biology and Medical Modelling, 10,36 doi:10.1186/1742-4682-10-36
  18. Behnam Neyshabur, Ahmadreza Khadem, Somaye Hashemifar, Seyed Shahriar Arab (2013) NETAL: A new graph-based method for global alignment of protein-protein interaction networks. Bioinformatics 1;29(13):1654-62. doi: 10.1093/bioinformatics/btt202
  19. Seyed Shahriar Arab, Mohammadbagher Parsa Gharamaleki, Zaiddodine Pashandi, Rezvan Mobasseri (2013) Putracer: A Novel Method For Identification Of Continuous-Domains In Multi-Domain Proteins. Journal of Bioinformatics and Computational Biology. Vol. 11, No. 1  doi: 10.1142/S021972001340012X
  20. Ayati M, Taheri G, Arab S, Wong L, Eslahchi C (2010) Overcoming Drug Resistance by Co-Targeting. Proceedings of 4th IEEE International Conference on Bioinformatics & Biomedicine, pages 198–201, Hong Kong.
  21. Arab S, Sadeghi M, Eslahchi C, Pezeshk H. A  (2010) A pairwise residue contact area-based mean force potential for discrimination of native protein structure. BMC Bioinformatics, 11:16  doi:10.1186/1471-2105-11-16 .
  22. Eslahchi C., Pezeshk H., Sadeghi M., Rahimi A. M., Maboudi Afkham H., Arab S (2009) Ston: A Novel Method for Protein three-dimensional Structure Comparison. Computers in Biology and Medicine, 39, 2: 166-172. doi: 10.1016/j.compbiomed.2008.12.004
  23. Sheari A, Kargar M, Katanforoush A, Arab S, Sadeghi M, Pezeshk H, Eslahchi C, Marashi S.A. (2008)   A Tale of two Symmetrical Tails: Structural and Functional Charateristics of Palindroms in Proteins. BMC Bioinformatics, 9:274. doi:  10.1186/1471-2105-9-274
  24. Shahriar Arab, Farzad Didehvar, Changiz Eslahchi, Mehdi Sadeghi (2007) Helix segment assignment in proteins using fuzzy logic. IRANIAN JOURNAL of BIOTECHNOLOGY, Vol. 5, 93-99
  25. Roghayeh Zarei, Shahriar Arab and Mehdi Sadeghi (2007) A Method for Protein Accessibility Prediction based on Residue Types and Conformational States. Computational Biology and Chemistry, Vol. 31, 384–388 doi: 10.1016/j.compbiolchem.2007.08.006
  26. Mehdi Sadeghi, Sahar Parto, Shahriar Arab, Bijan Ranjbar. (2005) Prediction of Protein Secondary Structure Based on Residue Pair types and Conformational States using Dynamic Programming Algorithm. FEBS Letters 579(16):  3397–3400 doi:10.1016/j.febslet.2005.04.082
  27. Hossein Naderi-Manesh, Mehdi Sadeghi, Shahriar Arab, and Ali A.Moosavi Movahed. (2001) Prediction of Protein Surface Accessibility with Information Theory. PROTEINS: Structure, Function, and Genetics 42: 452–459 doi: 10.1002/1097-0134(20010301)42:4<452::AID-PROT40>3.0.CO;2-Q

 

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